GgaEX0022141 @ galGal4
Exon Skipping
Description
Uncharacterized protein [Source:UniProtKB/TrEMBL;Acc:R4GI47]
Coordinates
chrZ:32669119-32684700:+
Coord C1 exon
chrZ:32669119-32669252
Coord A exon
chrZ:32676981-32677143
Coord C2 exon
chrZ:32684512-32684700
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTATTGCTTGCTTTGCACAGGAA
3' ss Score
6.86
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
ACATTGGAAACCAATTTAACGGTTGCAAGAGAACAACTAAAAGAGTTAAGCAGTAAATGCAGTAACTTGTCATCTCAGCTAGCGGTGAACCAGAAAGAACTCTCCCAAAAAGAATGTGATATGAACAGGACTAA
Seq A exon
GAAGGAGTTACAGGAGCTGCAGAATCTTTACAAACAAAACATTGCACATACGACACAGCAGGCTCAACTGATACACCAACTTCAGACTCTTAATACTGACACACAAAAAGTACTGAAGGAACAAGAAGATGTGCACACAACTGAAACAATATCATATCAAAAA
Seq C2 exon
CTCTATAATGAATTGACTTTGTGTTTTGAAACTTTAAAAACAAATGAAATTCAGCTGCAGCAAAGGTACACCTCTCTTCAGGATCAGTTACTTGGAAAAGATGAGAAGATTTGTCAGTTACAGGAACAACTTCAGCAGGCTCACGATGCTTTGAATATGTTACATCAGAATTCTTCTTGTGACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000028298_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.011 A=0.000 C2=NA
Domain overlap (PFAM):
C1:
PF061607=EzrA=PD(24.8=77.8),PF078886=CALCOCO1=FE(52.4=100)
A:
PF093116=Rab5-bind=PD(39.0=94.1)
C2:
NA
Main Skipping Isoform:
ENSGALT00000045875fB4512
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGTTGCAAGAGAACAACT
R:
GCCTGCTGAAGTTGTTCCTGT
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]