HsaEX0016078 @ hg19
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein, centrosomal protein [Source:HGNC Symbol;Acc:23432]
Coordinates
chr9:17273731-17309250:+
Coord C1 exon
chr9:17273731-17273864
Coord A exon
chr9:17298188-17298350
Coord C2 exon
chr9:17309056-17309250
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTATTGCTTGCTTTGCACAGGAA
3' ss Score
6.86
5' ss Seq
AAAGTATGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
ACCTTTGAAGACAATTTAATTGAAGCAAGGAAAGAAGTTGAAGTATCACAGAGTAAATACAATGCTCTATCATTACAGTTGAGTAATAAACAGACTGAACTTATCCAGAAGGATATGGATATTACCCTGGTCAG
Seq A exon
GAAGGAACTGCAGGAGCTGCAGAATCTTTACAAACAGAACAGTACACATACAGCCCAGCAAGCAGAGCTGATCCAGCAGCTTCAGGTTCTCAATATGGACACACAAAAAGTACTGAGAAATCAGGAAGATGTTCACACAGCTGAAAGTATATCATATCAAAAA
Seq C2 exon
CTTTACAATGAGTTACATATTTGTTTTGAAACCACAAAATCAAATGAAGCTATGCTCCGGCAAAGTGTTACTAATCTTCAGGATCAGCTATTACAAAAAGAGCAAGAAAATGCTAAGTTAAAAGAAAAACTTCAGGAATCACAGGGAGCACCTCTTCCTTTACCTCAAGAAAGTGATCCAGACTACTCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459-'11-12,'11-10,13-12
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.172 C2=0.678
Domain overlap (PFAM):
C1:
NO
A:
PF048997=MbeD_MobD=PU(15.7=14.5)
C2:
PF048997=MbeD_MobD=PD(80.4=63.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGAAGTTGAAGTATCACAGAGT
R:
GGTGCTCCCTGTGATTCCTGA
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)