DreEX6031820 @ danRer10
Exon Skipping
Gene
ENSDARG00000033345 | cntln
Description
centlein, centrosomal protein [Source:ZFIN;Acc:ZDB-GENE-090313-409]
Coordinates
chr1:26298076-26300644:-
Coord C1 exon
chr1:26300511-26300644
Coord A exon
chr1:26298385-26298547
Coord C2 exon
chr1:26298076-26298240
Length
163 bp
Sequences
Splice sites
3' ss Seq
TCATGTGCGCATGTGTCCAGGCG
3' ss Score
4.47
5' ss Seq
AAGGTACAG
5' ss Score
8.04
Exon sequences
Seq C1 exon
AATTTGGAAGAGGAAGTGTTCAGAAGCAGACAGGATTTGCTAGAGGCTCAGAGCCGCTCAACTGCTTTGTCCCTTCAGCTATCCTCAGTAGAACGAGAAAGAGCTGACAACGAACAACAACTCTGTCAAATCAA
Seq A exon
GCGTGAGCTCCAGGACCTGCAGTGTCTGTACAAGCAGAGCGTAGAACATGCAGGAGAACAGGCCCATCTTATTCAGCAGCTGGAGGGTCTTAACCTGGACACGCAAAGAGTCCTGCGCAGCCAGGAGGAGGCCCACACAGCGGACACCGTCTCTTACCAGAAG
Seq C2 exon
CTCTACAGCGAGCTGAGCGTGTCATACCAGGCCCTTTGGCACAGCCAGGAACAGCTCCACCAGCGGGAAGCAGCCCTCAGCATGCAGCTCAGCCAGAGAGATCAGCAGATCCAAGAACTCCAGGCACAGCTGCAGAGTTTCACAGCAGCCGCGGGGCACTGTGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000033345-'9-9,'9-8,11-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.089 A=0.200 C2=0.236
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGATTTGCTAGAGGCTCAGAGC
R:
CTGCTGTGAAACTCTGCAGCT
Band lengths:
250-413
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]