MmuEX6094231 @ mm9
Exon Skipping
Gene
ENSMUSG00000038070 | Cntln
Description
centlein, centrosomal protein [Source:MGI Symbol;Acc:MGI:2443104]
Coordinates
chr4:84617035-84625425:+
Coord C1 exon
chr4:84617035-84617168
Coord A exon
chr4:84619767-84619929
Coord C2 exon
chr4:84625228-84625425
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTATCGCTTGCTCTGCACAGGAA
3' ss Score
6.98
5' ss Seq
AAAGTACGC
5' ss Score
6.02
Exon sequences
Seq C1 exon
GTCCTTGAAGAAAATTTGATTGAAGCAAAGAAAGAAATTGAGTCAGCACAGACTAAATATAATGTTGTGTCACAACAGCTGAATAACAAACAGGCTGAACTTCTCCAAAAAGATATGGATATTACATTGATCAG
Seq A exon
GAAAGAGCTGCAGGAGCTGCAGAACGTGTACAAGCAGAACAGTGCCCACACAGCCCAGCAAGCAGACCTGATCCAGCAGCTCCAGGCTCTCAACATGGACACGCAGAAAGTCCTGAGGAACCAGGAAGACGTCCACACGGCCGAGAGCATGTCATACCAAAAA
Seq C2 exon
CTTTATAATGAATTACATATGTGTTTTGAAACTACAAAATCAAATGAAGTTATGCTCCGACAAAGTGTTGTTAATCTTCAAGGCCAACTGTTTCAAAAAGAACAAGAAAATGTAAAATTAAAAGAAAAACTTGAGGAATCACAAGGAACAGCACCCTCTTTATCACCACACGACAGTGATTCAAGCCACTCAGGAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000038070-'6-7,'6-6,7-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.371 C2=0.433
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAAACAGGCTGAACTTCTCCA
R:
CCTGAGTGGCTTGAATCACTGT
Band lengths:
243-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: