HsaEX0016078 @ hg38
Exon Skipping
Gene
ENSG00000044459 | CNTLN
Description
centlein [Source:HGNC Symbol;Acc:HGNC:23432]
Coordinates
chr9:17273733-17309252:+
Coord C1 exon
chr9:17273733-17273866
Coord A exon
chr9:17298190-17298352
Coord C2 exon
chr9:17309058-17309252
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTATTGCTTGCTTTGCACAGGAA
3' ss Score
6.86
5' ss Seq
AAAGTATGC
5' ss Score
5.06
Exon sequences
Seq C1 exon
ACCTTTGAAGACAATTTAATTGAAGCAAGGAAAGAAGTTGAAGTATCACAGAGTAAATACAATGCTCTATCATTACAGTTGAGTAATAAACAGACTGAACTTATCCAGAAGGATATGGATATTACCCTGGTCAG
Seq A exon
GAAGGAACTGCAGGAGCTGCAGAATCTTTACAAACAGAACAGTACACATACAGCCCAGCAAGCAGAGCTGATCCAGCAGCTTCAGGTTCTCAATATGGACACACAAAAAGTACTGAGAAATCAGGAAGATGTTCACACAGCTGAAAGTATATCATATCAAAAA
Seq C2 exon
CTTTACAATGAGTTACATATTTGTTTTGAAACCACAAAATCAAATGAAGCTATGCTCCGGCAAAGTGTTACTAATCTTCAGGATCAGCTATTACAAAAAGAGCAAGAAAATGCTAAGTTAAAAGAAAAACTTCAGGAATCACAGGGAGCACCTCTTCCTTTACCTCAAGAAAGTGATCCAGACTACTCAGCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000044459_MULTIEX2-6/8=5-7
Average complexity
C1*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.173 C2=0.682
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAAAGAAGTTGAAGTATCACAGAGT
R:
GGTGCTCCCTGTGATTCCTGA
Band lengths:
258-421
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development