GgaEX0022141 @ galGal3
Exon Skipping
Gene
ENSGALG00000015097 | CNTLN
Description
NA
Coordinates
chrZ:32564711-32580800:+
Coord C1 exon
chrZ:32564711-32564844
Coord A exon
chrZ:32573081-32573243
Coord C2 exon
chrZ:32580612-32580800
Length
163 bp
Sequences
Splice sites
3' ss Seq
TTATTGCTTGCTTTGCACAGGAA
3' ss Score
6.86
5' ss Seq
AAAGTATGT
5' ss Score
6.93
Exon sequences
Seq C1 exon
ACATTGGAAACCAATTTAACGGTTGCAAGAGAACAACTAAAAGAGTTAAGCAGTAAATGCAGTAACTTGTCATCTCAGCTAGCGGTGAACCAGAAAGAACTCTCCCAAAAAGAATGTGATATGAACAGGACTAA
Seq A exon
GAAGGAGTTACAGGAGCTGCAGAATCTTTACAAACAAAACATTGCACATACGACACAGCAGGCTCAACTGATACACCAACTTCAGACTCTTAATACTGACACACAAAAAGTACTGAAGGAACAAGAAGATGTGCACACAACTGAAACAATATCATATCAAAAA
Seq C2 exon
CTCTATAATGAATTGACTTTGTGTTTTGAAACTTTAAAAACAAATGAAATTCAGCTGCAGCAAAGGTACACCTCTCTTCAGGATCAGTTACTTGGAAAAGATGAGAAGATTTGTCAGTTACAGGAACAACTTCAGCAGGCTCACGATGCTTTGAATATGTTACATCAAAATTCTTCTTGTGACTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015097-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACGGTTGCAAGAGAACAACT
R:
GCCTGCTGAAGTTGTTCCTGT
Band lengths:
257-420
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]