DreEX6031989 @ danRer10
Exon Skipping
Gene
ENSDARG00000019715 | metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:ZFIN;Acc:ZDB-GENE-050522-71]
Coordinates
chr1:30151926-30152580:+
Coord C1 exon
chr1:30151926-30152092
Coord A exon
chr1:30152170-30152319
Coord C2 exon
chr1:30152432-30152580
Length
150 bp
Sequences
Splice sites
3' ss Seq
AAAATTCTACTTTGTCATAGCAC
3' ss Score
4.39
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GTGGCTTAAGGCTGCTACAGAGAATTTCAAGGCTACCTCACTGCCACAAAGATGCATCTTTGGCCCACCAGTGCCAATTTCACCGATCTTTCTTCTGGAGGAAGCCAAAAACTTCCCACAGTGTAGTCCGGCCTGCCATAGTGCGCCCAGCTTATCCCGTACCCAAG
Seq A exon
CACATTCAGAGGCCTGACTACGTGTCATCCAGCAAAGTGCCTGAATGGCCAGATTACATTGAGATTAAAGATGAAGAGCAGATCCAGGGATTAAGACGAGCGTGTCAACTAGCCAGACACATACTGCTGCTGACAGGAAACAGTTTGAAG
Seq C2 exon
GTTGGTATGACGACAGATGAAATAGACTTTATAGTCCATCAAGAAGCGATTCGTCACAATGGCTACCCTTCTCCCTTACATTATGGGGGCTTTCCGAAGTCGGTCTGTACCTCTGTGAACAATGTTGTATGTCACGGCATTCCAGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000019715-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0055719=Peptidase_M24=PU(25.9=42.0)
C2:
PF0055719=Peptidase_M24=FE(21.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCAGTGCCAATTTCACCGA
R:
CTGTCTGGAATGCCGTGACAT
Band lengths:
251-401
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]