MmuEX6102116 @ mm9
Exon Skipping
Gene
ENSMUSG00000041921 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:MGI Symbol;Acc:MGI:1913809]
Coordinates
chr2:71344842-71349617:+
Coord C1 exon
chr2:71344842-71344999
Coord A exon
chr2:71347798-71347947
Coord C2 exon
chr2:71349469-71349617
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTTAATCCCCTTTCCTCAAGCGC
3' ss Score
5.34
5' ss Seq
AAGGTGGTA
5' ss Score
-0.15
Exon sequences
Seq C1 exon
GTTGTCAGAGAATTCTGTCTTCGCCACTCAATCATATCTACTTACACAAGCGGTCAGGCAGTCAACAAAGAAGACATTTCTTTTTCTGGAGACAAAGGGATATCTCCCACAGTGTGGTTTCACCGGCTGCCGTCTCTCCCGCACATCCTGTCCCCAAG
Seq A exon
CGCATAAAGAAGCCAGACTACGTGACGACAGGCATTGTGCCGGACTGGGGAGACAGCATAGAAGTGAAGGATGAAGATCAGATTCAAGGGCTTCGTGAGGCTTGTCGGCTGGCGAGACACGTCCTCCTCCTGGCTGGGAAGAGTTTAAAG
Seq C2 exon
GTTGACATGACAACTGAAGAGATAGATGCGCTTGTTCATTGGGAAATCATCAGGCATGACGCATATCCCTCACCTCTGGGCTATGGACGCTTTCCAAAATCTGTTTGCACCTCTGTAAACAACGTGCTCTGTCATGGCATTCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041921-'6-10,'6-7,7-10=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0055719=Peptidase_M24=PU(13.3=42.0)
C2:
PF0055719=Peptidase_M24=FE(21.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGGTCAGGCAGTCAACAAAGA
R:
AATGCCATGACAGAGCACGTT
Band lengths:
249-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: