GgaEX1035932 @ galGal3
Exon Skipping
Gene
ENSGALG00000009513 | F1P5C7_CHICK
Description
NA
Coordinates
chr7:19261619-19267636:-
Coord C1 exon
chr7:19267483-19267636
Coord A exon
chr7:19264940-19265089
Coord C2 exon
chr7:19261619-19261767
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTCAATCCTTTTTCTCCAAGCAC
3' ss Score
3.86
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
CTGCCTCAGAATTTTTTCTTCATGCAATCGTGTCTACCTGCACAGGCAATCAAGCAATCAACAACGGAGATGCTTCTTTTCTCAGGGACAAAGAAATGCTGTTTATAGCGTAGTCTGGCCAGCAATGGTTTCTCCAGCTCATCCAGTTCCCAAG
Seq A exon
CACATAAAGAAGCCAGACTATGTGACGACAGGCATTGTACCAGACTGGGGAGACGACATAGAAATTAAGAATGAAGATCAGATTCAAGGGCTTCGTCAGGCTTGTCAATTGGCCCGTCATGTCCTGCTTCTGGCTGGAAAGGGCTTAAAG
Seq C2 exon
GTTGGCATGACAACTGAAGAAATAGATTCCATTGTTCATCATGAAATAATCAGACGGAATGCCTATCCTTCACCTCTGGGCTATGGAGGTTTTCCAAAATCTGTTTGTACTTCTGTAAACAACGTGGTATGTCATGGTATTCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009513-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0055719=Peptidase_M24=PU(9.2=42.0)
C2:
PF0055719=Peptidase_M24=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCACAGGCAATCAAGCAATCA
R:
ACCATGACATACCACGTTGTT
Band lengths:
253-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]