RnoEX0053956 @ rn6
Exon Skipping
Gene
ENSRNOG00000061587 | Metap1d
Description
methionyl aminopeptidase type 1D (mitochondrial) [Source:RGD Symbol;Acc:1307413]
Coordinates
chr3:58138426-58146481:+
Coord C1 exon
chr3:58138426-58138580
Coord A exon
chr3:58141409-58141558
Coord C2 exon
chr3:58146333-58146481
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTCAATCCCTTTTCCTCAAGCAC
3' ss Score
4.52
5' ss Seq
AAGGTGGCG
5' ss Score
2.19
Exon sequences
Seq C1 exon
GTTGTCAGAGAATTCTGTCTTCACCACTCCATCATCTCTTCTTACACAAGCGGGCAGGCAGTCAACAAAGAAGATATTTCTTCTGGAGACAAAGGGATATCTCCCACAGTGTGGTTTCGCCGGCTGCAGTCTCTCCCGCACATCCTGTCCCCGAG
Seq A exon
CACATAAAGAAGCCAGACTATGTGACGACAGGCATTGTGCCCGACTGGGGAGACAGCATAGAAGTTAAAAATGAAGATCAGATTCAAGGGCTTCGTGAGGCTTGTCGGCTGGCGCGGCACGTCCTCCTCCTGGCTGGGAAGAGTTTAAAG
Seq C2 exon
GTTGGCATGACAACTGAAGAGATAGATGCACTAGTTCACCGGGAAATCATCAGGCGTGACGCATATCCCTCACCTCTGGGCTATGGCCGCTTTCCAAAATCTGTCTGCACCTCTGTAAACAATGTGCTCTGTCATGGCATTCCTGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000061587_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.019 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0055719=Peptidase_M24=PU(9.2=42.0)
C2:
PF0055719=Peptidase_M24=FE(21.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGCAGGCAGTCAACAAAGAA
R:
GGAATGCCATGACAGAGCACA
Band lengths:
247-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]