HsaEX0001111 @ hg38
Exon Skipping
Gene
ENSG00000172878 | METAP1D
Description
methionyl aminopeptidase type 1D, mitochondrial [Source:HGNC Symbol;Acc:HGNC:32583]
Coordinates
chr2:172061498-172066306:+
Coord C1 exon
chr2:172061498-172061655
Coord A exon
chr2:172063711-172063860
Coord C2 exon
chr2:172066264-172066306
Length
150 bp
Sequences
Splice sites
3' ss Seq
TTCAATCCTTTTTCCTCAAGCAC
3' ss Score
4.89
5' ss Seq
AAGGTGGCG
5' ss Score
2.19
Exon sequences
Seq C1 exon
GTTCTCATAGAATTTTCTCTTCACCACTCAATCATATCTACTTACACAAGCAGTCAAGCAGTCAACAAAGAAGAAATTTCTTTTTTCGGAGACAAAGAGATATTTCACACAGTATAGTTTTGCCGGCTGCAGTTTCTTCAGCTCATCCGGTTCCTAAG
Seq A exon
CACATAAAGAAGCCAGACTATGTGACGACAGGCATTGTACCAGACTGGGGAGACAGCATAGAAGTTAAGAATGAAGATCAGATTCAAGGGCTTCATCAGGCTTGTCAGCTGGCCCGCCACGTCCTCCTCTTGGCTGGGAAGAGTTTAAAG
Seq C2 exon
TCGACCTCTTCAGGATGGAGATATTATCAACATTGATGTCACA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000172878_MULTIEX1-1/2=C1-C2
Average complexity
C2*
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0055719=Peptidase_M24=PU(13.3=42.0)
C2:
PF0055719=Peptidase_M24=FE(6.1=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTCATAGAATTTTCTCTTCACCAC
R:
TGATAATATCTCCATCCTGAAGAGGT
Band lengths:
186-336
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development