DreEX6033547 @ danRer10
Exon Skipping
Gene
ENSDARG00000074635 | abca1a
Description
ATP-binding cassette, sub-family A (ABC1), member 1A [Source:ZFIN;Acc:ZDB-GENE-031006-12]
Coordinates
chr1:51925841-51930705:+
Coord C1 exon
chr1:51925841-51925968
Coord A exon
chr1:51928520-51928625
Coord C2 exon
chr1:51930612-51930705
Length
106 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTATTATCTTGACAGCTT
3' ss Score
6.98
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
GAACACAAAGCACCACCAGTACAATATCGCTCGGAGAGAGTTTAAACAGCTGCTTTATCCTCTCTTTTCTAAAAGGATTTACAGTTTATATGAAATAAGGAACAATCATTAAGGAGCAAGAAATAGCG
Seq A exon
CTTCTGTAAGGCGGCACGGATAGTGTGTATCCGTGGTAAGATGGCTGTCTCCACTCAGTTGGGTTTACTGTTGTGGAAGAACTTCACCTACAGACGGAGACAGACT
Seq C2 exon
ATTCAGCTGCTGGTCGAGATCATATGGCCACTTTTCATCTTTTTCATCTTGATATCTGTCAGACTCTACTATCCGCCATACGAGCAACATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000074635-'0-3,'0-0,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACACAAAGCACCACCAGTACA
R:
TTCATGTTGCTCGTATGGCGG
Band lengths:
219-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]