RnoEX0004731 @ rn6
Exon Skipping
Gene
ENSRNOG00000018126 | Abca1
Description
ATP binding cassette subfamily A member 1 [Source:RGD Symbol;Acc:631344]
Coordinates
chr5:69956054-69983015:-
Coord C1 exon
chr5:69982734-69983015
Coord A exon
chr5:69966742-69966907
Coord C2 exon
chr5:69956054-69956147
Length
166 bp
Sequences
Splice sites
3' ss Seq
TCTCTTGTTTTATCTTTCAGTTA
3' ss Score
11.08
5' ss Seq
ACAGTAAGT
5' ss Score
9.49
Exon sequences
Seq C1 exon
TAACCCCGGCGCTCGGCACAGCCGAATCTATAAAAGGAACTAGTCGCGGCAAAAACCAGTAATTCCGAGAGCGAGCGAGCGGGCCGGGACCGGCAGAGCCCACTTCTGTCTCTGCGGCTCAGCGCAAAGCTGGGCAGGGGGCGCCGCGGGACCCGCGCAACCACAGCCGGCTTGGGGAGCTGCTCTGCTCCCTGTCCCCACCCCCTACTTTTTTCTCCCGGTTTCTGGAAGGGTTTGTGTAGGGGTTGGGTAAACAGACGCAAACAGCAAAGTGGAAAACAG
Seq A exon
TTAATGACCAGCCACAGTGTCACAGCTCCGTGCTCTGGCTGCTTCCTCCAGGGCTCTCAAGCCACACACACAGATCACTGTGGGTGCTGGCAGAGGTAACATGGCTTGTTGGTCTCAGTTAAGGTTGCTGCTGTGGAAGAATCTGACATTTCGAAGAAGACAAACA
Seq C2 exon
TGTCAGCTGTTACTGGAAGTGGCCTGGCCTCTCTTTATCTTCCTGATCCTGATTTCTGTCCGCCTGAGCTACCCACCCTATGAACAACATGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018126-'0-3,'0-1,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATTCCGAGAGCGAGCGAG
R:
GGCCACTTCCAGTAACAGCTG
Band lengths:
248-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]