DreEX0009886 @ danRer10
Exon Skipping
Gene
ENSDARG00000079009 | abca1b
Description
ATP-binding cassette, sub-family A (ABC1), member 1B [Source:ZFIN;Acc:ZDB-GENE-030131-9826]
Coordinates
chr14:6117246-6127700:+
Coord C1 exon
chr14:6117246-6117415
Coord A exon
chr14:6122991-6123091
Coord C2 exon
chr14:6127607-6127700
Length
101 bp
Sequences
Splice sites
3' ss Seq
TCTCCGTTGTGTCATTGCAGTTG
3' ss Score
8.4
5' ss Seq
ACGGTAAGA
5' ss Score
10.65
Exon sequences
Seq C1 exon
GACCGACAGTAACCCAGGCGCTCCGAGCGGATGCGCTATAAAACCACTTTAAACCCTTCAGATGCCCCTTCACACGAGAACCACCGGCGTCAGACTCCACAAGGACGAATAAACATCTGATTCACTTGGATTACAACGAATGTCCTACACAAGTCATCAGCTGTGTCTGG
Seq A exon
TTGAGAGCTGAGCGCGAAGAGGGACCCGAGTGAAGATGTCCATCTCCACTCAACTGGGTCTGCTGCTGTGGAAGAACTTCACCTACAGACGGAGACAAACG
Seq C2 exon
CTCCAACTGCTGACTGAGATTGTGTGGCCTCTCTTTATTTTCTTCATCCTGATCGCCGTGAGGTTGTACTACCCGCCTTATGAACAACATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000079009-'0-5,'0-4,2-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACAGTAACCCAGGCGCTC
R:
AAGGCGGGTAGTACAACCTCA
Band lengths:
245-346
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]