MmuEX0002934 @ mm9
Exon Skipping
Gene
ENSMUSG00000015243 | Abca1
Description
ATP-binding cassette, sub-family A (ABC1), member 1 [Source:MGI Symbol;Acc:MGI:99607]
Coordinates
chr4:53145794-53172767:-
Coord C1 exon
chr4:53172548-53172767
Coord A exon
chr4:53156802-53156967
Coord C2 exon
chr4:53145794-53145887
Length
166 bp
Sequences
Splice sites
3' ss Seq
TCTCTCGTTTTATCTTTCAGTTA
3' ss Score
11.17
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
Exon sequences
Seq C1 exon
AGTAATTCCGAGGGCGAGCGAGCGGGCCGGGACCGGCAGAGCCCACTTCTCTCCGCGGCGCAGCGCAAAGCTGGGCAGGGGGCGCCGCGGGACCCGCGCAACCACAGCCGGCTTGGGGAGCTGCTCTGCTCCCTGTTTCCCCCCACTTTTTTCTTCCCCTTTCTGGAAGGGTTTGTGCAGGGGTAGGGAAAACAGACTCAAACAGCAAAGTGGAAAACAG
Seq A exon
TTAATGACCAGCCACAGAGTCACAGCTCTGTGCTCTGGCTGCTCCCTCCAGGGCTCTCGAGCCGCAGACGCAGGTCGCTGTGGGTGCCGGCTGTGGTGACATGGCTTGTTGGCCTCAGTTAAGGCTGCTGCTGTGGAAGAATCTGACATTTCGAAGGAGACAAACA
Seq C2 exon
TGTCAGCTGTTACTGGAAGTGGCCTGGCCTCTCTTTATCTTCCTGATCCTGATCTCTGTACGCCTGAGCTACCCACCCTACGAACAACATGAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000015243-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTAATTCCGAGGGCGAGCG
R:
GGCCACTTCCAGTAACAGCTG
Band lengths:
243-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: