BtaEX6035665 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000020661 | ABCA1
Description
Bos taurus ATP-binding cassette, sub-family A (ABC1), member 1 (ABCA1), mRNA. [Source:RefSeq mRNA;Acc:NM_001024693]
Coordinates
chr8:96373264-96390357:-
Coord C1 exon
chr8:96389815-96390357
Coord A exon
chr8:96387170-96387333
Coord C2 exon
chr8:96373264-96373357
Length
164 bp
Sequences
Splice sites
3' ss Seq
CCTCTTGCTTTATCTTTCAGTTA
3' ss Score
10.49
5' ss Seq
ACAGTAAGC
5' ss Score
5.94
Exon sequences
Seq C1 exon
CTTTCCAACCAGTAACTGGAAATGTGCACAGGGGCAGAAATGAGTGTGCTACTAGCTTTGAAGCATTGAGAAATCTAGTCAATACATAGTACGGCCTTCTTTTTGGTTTTGGTTTGTTTGTTTGCTTCCTTGGAAAACTGATGTAGAAATGTCCCTTTGGCCCCAGTTACCTGAGAAGAGGATTTGGGCATTGCCAAAACCTCCTCTTTGGATAAAATTGCTCCCAGCAGTGGTCACCATGTTCTGAGGTGGGAGGAGGGAATTATGCAAGAGGCCCAGGGCTATGCCAAGGTGGGTAGGAAAGCGGGGCAGGTACCCAGCGAAGCCGGAGCGATACCTTCCACCGCTGCATAGGCTACTTTTGCTGACGTCTCTGCGTGTCTCCTGGAGGGTCTCTGAAGCCAGGATCTGTGTCTGGAAATGCAGAAACCCCGCTTTAGGAAAACACTCTCCAGAAAGCTTCCTCCTGGCCGTTCTCGTCTCGCGCCCATTCTGCAGAG
Seq A exon
TTAATGACCAGCCACAGCGTCCCTGCTGTGAGCTCCAGCCACTTCCTTCCCGGGCTCCCGAGCCTCACGCAGGCTGCTGTGGTGCTGGCTGAGGTAACATGGCTTACTGGCCTCAGCTGAGATTGCTGCTGTGGAAGAACCTCACTTTCAGAAGAAGACAAACA
Seq C2 exon
TGTCAACTGTTTCTTGAAGTGGCCTGGCCTCTATTCATCTTCCTGATCCTGATCTCCGTGCGGCTGAGCTATCCACCCTATGAACAACATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000020661-'1-4,'1-1,4-4=AN
Average complexity
A_C2
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTATGCCAAGGTGGGTAGGA
R:
GCCAGGCCACTTCAAGAAACA
Band lengths:
248-412
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]