GgaEX0022622 @ galGal4
Exon Skipping
Gene
ENSGALG00000015433 | ABCA1
Description
ATP-binding cassette sub-family A member 1 [Source:RefSeq peptide;Acc:NP_989476]
Coordinates
chrZ:54620576-54641346:-
Coord C1 exon
chrZ:54641216-54641346
Coord A exon
chrZ:54626008-54626148
Coord C2 exon
chrZ:54620576-54620669
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTGAACTCTTGCTTTCTAGTTA
3' ss Score
6.43
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CCGGGAGCGCGGCCGGCGTCGGGGCCGGATCCGTGAGTGGCAGAGCTGCGCTCGGGAGAAGTGGAGCGAAGCGAGCCGACTCGGCTCGGTGCGGGACCGAGGGCGGCTGCCCAGGGCTCCCCGGCCCGGAG
Seq A exon
TTAATGCCCAGCCATAACGTCCTTGTTGTGTACTGCTGCTGCTGCACAAAGGGAAGAAGGCATTGCTGAAGAACGATGGCATTTTGGACGCAGCTGGGATTGCTGCTATGGAAGAACTTCACCTACAGAAGAAGACAGACT
Seq C2 exon
TTCCAGCTGCTGATCGAAGTTGCTTGGCCTCTGTTTATCTTCTTCATCCTGATCTCTGTAAGACTTTCATATCCGCCCTACGAACAGCATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433_CASSETTE6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCCGGATCCGTGAGTGG
R:
ATTCATGCTGTTCGTAGGGCG
Band lengths:
203-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]