GgaEX0022622 @ galGal3
Exon Skipping
Gene
ENSGALG00000015433 | E1C619_CHICK
Description
NA
Coordinates
chrZ:53674892-53696806:-
Coord C1 exon
chrZ:53696755-53696806
Coord A exon
chrZ:53679930-53680070
Coord C2 exon
chrZ:53674892-53674985
Length
141 bp
Sequences
Splice sites
3' ss Seq
TTTGAACTCTTGCTTTCTAGTTA
3' ss Score
6.43
5' ss Seq
ACTGTAAGT
5' ss Score
8.59
Exon sequences
Seq C1 exon
CTCGGCTCGGTGCGGGACCGAGGGCGGCTGCCCAGGGCTCCCCGGCCCGGAG
Seq A exon
TTAATGCCCAGCCATAACGTCCTTGTTGTGTACTGCTGCTGCTGCACAAAGGGAAGAAGGCATTGCTGAAGAACGATGGCATTTTGGACGCAGCTGGGATTGCTGCTATGGAAGAACTTCACCTACAGAAGAAGACAGACT
Seq C2 exon
TTCCAGCTGCTGATCGAAGTTGCTTGGCCTCTGTTTATCTTCTTCATCCTGATCTCTGTAAGACTTTCATATCCGCCCTACGAACAGCATGAAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015433-'0-5,'0-4,6-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]