DreEX6034341 @ danRer10
Exon Skipping
Gene
ENSDARG00000102825 | olfm2b
Description
olfactomedin 2b [Source:ZFIN;Acc:ZDB-GENE-040426-2402]
Coordinates
chr1:58539266-58541368:-
Coord C1 exon
chr1:58541228-58541368
Coord A exon
chr1:58540995-58541150
Coord C2 exon
chr1:58539266-58539485
Length
156 bp
Sequences
Splice sites
3' ss Seq
CTGTGTGTGTGTGTCTACAGGTG
3' ss Score
12.07
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GTGTTGTACCCCGGGCAGGATGAGGGCTGGCAGGTGTACGGCTCTGCTCAGGGCCGATGTGTTTGCTCCATCAAGACTCCTGTTCCGGACGCCTGCGCTGGAGACCCTCGACACACTCGCCTGCAGCAGATCTCTGCACAC
Seq A exon
GTGCTGAACGTCTCTGAGCACATGCAGCTCCTGACTCGGCGCACCGCTGGAGATCTGCAGGAGCTCAGAAGCTCGGAGACGATATTGGACACACTGGAGAAAACACTGACCAGTGCCCAGCAGAACCCGCAGGAGCTGAGCGACAGGAGCCTGCAG
Seq C2 exon
GAGCTGCGCTGGAGTGTGTCTCAGTGTCGCCCCCTGCGGGTGCTGCTGACTCGAGTGCGTGCGGATGTGGCTCAGCTGGACTCTGTGCGTGACGAGCTGCAGGGGATCAGTGTGTCGCTGTCACTGCTGCAGGAACGCTTCACACTCCAGCACTATCAGCAGCTGCAGCAGCGCATCTCCATCCTGCAGCAACACCTGCACAGCTGCTCCAGCCACCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000102825-'7-6,'7-2,8-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.085 A=0.192 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(44.9=93.6),PF127952=MscS_porin=PU(15.8=48.9)
A:
PF123083=Noelin-1=FE(52.0=100),PF127952=MscS_porin=FE(34.9=100)
C2:
PF123083=Noelin-1=PD(0.1=0.0),PF127952=MscS_porin=PD(47.3=93.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCGATGTGTTTGCTCCATCA
R:
GCTGCTGATAGTGCTGGAGTG
Band lengths:
252-408
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]