MmuEX6064166 @ mm10
Exon Skipping
Gene
ENSMUSG00000032172 | Olfm2
Description
olfactomedin 2 [Source:MGI Symbol;Acc:MGI:3045350]
Coordinates
chr9:20672135-20675723:-
Coord C1 exon
chr9:20675574-20675723
Coord A exon
chr9:20672627-20672773
Coord C2 exon
chr9:20672135-20672354
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGAATGGTTTTCCTTCTAGGTC
3' ss Score
10.53
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACTCTCTTCCAGAGCCCGGAGGAGGGCTGGCAGCTTTATACGTCAGCCCAGGCACCTGATGGCAAGTGCGTCTGCACAGCCGTGATCCCTGCGCAGAGCACCTGTGCCCGAGACGGTCGGAGCAGAGAGCTTCGGCAACTCATGGAGAAG
Seq A exon
GTCCAGAATGTGTCCCAGTCCATGGAGGTCCTTGAGCTAAGGACATTCCGGGATCTCCAGTATGTTCGCAGCATGGAGACCCTCATGCGGAGCCTGGATGCAAGGCTCAGGGCAGCCGATGGGTCAGTCTCAGCCAAAAGCTTTCAG
Seq C2 exon
GAACTGAAGGACAGGATGACAGAGCTGCTGCCCCTGAGTTCAGTGCTGGAGCAGTACAAAGCAGACACACGAACCATTGTGCGCCTGCGGGAGGAGGTGAGGAACCTCTCTGGCAACCTGGCTGCCATCCAAGAGGAAATGGGTGCCTACGGGTACGAGGACTTGCAACAGCGCGTGATGGCCCTGGAAGCCCGACTCCATGCCTGCGCGCAGAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032172-'6-10,'6-8,10-10
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.053 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(48.0=94.0)
A:
PF123083=Noelin-1=FE(49.0=100)
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGGCTGGCAGCTTTATA
R:
GTTGCCAGAGAGGTTCCTCAC
Band lengths:
248-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types