GgaEX1041248 @ galGal4
Exon Skipping
Gene
ENSGALG00000005203 | OLFM3
Description
olfactomedin 3 [Source:HGNC Symbol;Acc:HGNC:17990]
Coordinates
chr8:10463902-10470039:+
Coord C1 exon
chr8:10463902-10464048
Coord A exon
chr8:10465857-10466012
Coord C2 exon
chr8:10469820-10470039
Length
156 bp
Sequences
Splice sites
3' ss Seq
AGAGTGTTCTTCTTTAACAGGTT
3' ss Score
8.81
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ACTCAGATTAGCCCCAAGGAAGGGTGGCAAGTTTATAGTTCAGCCCAGGATCCTGATGGCCGCTGCATTTGTACTGTTGTTGCACCTGAACAAAACCTGTGTTCAAGAGATGCCAAGAGCAGACAGCTTAGACAGCTGCTAGAGAAG
Seq A exon
GTTCAGAATATGTCCCAATCTATTGAAGTTTTAAATCTACGGACTCAGAGGGATTTCCAGTATGTTTTAAAAATGGAAACACAAATGAAAGGGCTGAAGGCCAAGTTTCGGCAAATTGAAGATGATCGGAAGACATTAATGACAAAGCATTTTCAA
Seq C2 exon
GAGTTGAAAGAAAAGATGGATGAGCTCCTGCCACTGATCCCAGTTCTGGAGCAATACAAAACTGATGCAAAATTAATCACCCAGTTCAAGGAGGAAATTAGGAATCTGTCTACTGTCCTCACTGGTATTCAGGAAGAAATTGGTGCTTATGACTATGATGAACTACACCAGCGGGTGCTCAGTTTAGAAACAAGGCTTCGAGACTGCATGAAAAAGCTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005203_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(46.5=95.9)
A:
PF123083=Noelin-1=FE(50.5=100)
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCACCTGAACAAAACCTGTGT
R:
ACCCGCTGGTGTAGTTCATCA
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]