BtaEX0025364 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000000845 | OLFM3
Description
olfactomedin 3 [Source:HGNC Symbol;Acc:HGNC:17990]
Coordinates
chr3:41599289-41613928:+
Coord C1 exon
chr3:41599289-41599435
Coord A exon
chr3:41608900-41609055
Coord C2 exon
chr3:41613709-41613928
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCAGTGTTCTTGTTTAACAGGTT
3' ss Score
9.71
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ACTCAGATTAGTCCCAAAGAAGGGTGGCAGGTATATAGCTCAGCACAGGATCCTGATGGACGATGCATTTGCACAGTGGTTGCTCCAGAACAAAACCTGTGTTCCCGGGATGCCAAAAGCAGGCAGCTTCGCCAGCTGCTGGAAAAG
Seq A exon
GTTCAGAATATGTCCCAATCTATTGAAGTCTTAAACTTGAGAACTCAAAGAGATTTCCAATACGTCCTAAAAATGGAAACACAAATGAAAGGGCTGAAAGCCAAGTTTCGGCAGATTGAAGATGACCGGAAGACACTAATGACCAAGCATTTTCAA
Seq C2 exon
GAGCTGAAAGAGAAGATGGACGAGCTCCTGCCTTTGATTCCTGTGCTAGAACAGTACAAAACAGATGCCAAGTTAATCACCCAATTCAAGGAGGAAATCCGGAATCTGTCTGCTGTCCTCACGGGAATTCAGGAAGAGATCGGTGCCTATGACTATGAGGAGCTACATCAAAGGGTGCTCAGCTTGGAAACCAGACTTCGTGACTGCATGAAGAAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000000845_MULTIEX1-2/2=1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.102 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(46.5=95.9)
A:
PF123083=Noelin-1=FE(50.5=100)
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGATCCTGATGGACGATGCA
R:
AGGCACCGATCTCTTCCTGAA
Band lengths:
249-405
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development