RnoEX0062235 @ rn6
Exon Skipping
Gene
ENSRNOG00000017969 | Olfm3
Description
olfactomedin 3 [Source:RGD Symbol;Acc:628672]
Coordinates
chr2:217971903-217983563:+
Coord C1 exon
chr2:217971903-217972049
Coord A exon
chr2:217978493-217978648
Coord C2 exon
chr2:217983344-217983563
Length
156 bp
Sequences
Splice sites
3' ss Seq
GACTTCTTTTTTTTAAACAGGTA
3' ss Score
10.58
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ACTCAGATTAGCCCCAAAGAAGGGTGGCAAGTGTACAGCTCAGCACAGGACCCCGATGGACGATGCATTTGTACTGTGGTGGCTCCAGAACAAAACCTGTGTTCCAGAGATGCCAAAAGCAGGCAGCTCCGCCAGCTACTGGAAAAG
Seq A exon
GTACAGAATATGTCCCAGTCTATAGAAGTCTTAAACTTGAGAACTCAGAGAGATTTTCAATACGTCTTAAAGATGGAAACCCAAATGAAAGGGCTGAAGGCCAAGTTTCGGCAGATTGAAGATGATCGGAAGACGCTAATGACCAAGCATTTTCAA
Seq C2 exon
GAGTTGAAAGAGAAAATGGACGAGCTACTGCCCCTCATCCCAGTGTTGGAGCAGTACAAAACCGACGCAAAGCTCATCACGCAGTTCAAGGAGGAAATCCGGAACCTGTCTTCAGTCCTCACTGGGATTCAGGAGGAAATCGGTGCCTATGACTATGAAGAACTGCACCAACGGGTCCTCAGCTTAGAAACTAGGCTTCGTGACTGCATGAAAAAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000017969-'1-3,'1-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(46.5=95.9)
A:
PF123083=Noelin-1=FE(50.5=100)
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGGCTCCAGAACAAAACC
R:
CCCGTTGGTGCAGTTCTTCAT
Band lengths:
246-402
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]