MmuEX6073607 @ mm9
Exon Skipping
Gene
ENSMUSG00000027965 | Olfm3
Description
olfactomedin 3 [Source:MGI Symbol;Acc:MGI:2387329]
Coordinates
chr3:114792999-114804941:+
Coord C1 exon
chr3:114792999-114793145
Coord A exon
chr3:114799794-114799949
Coord C2 exon
chr3:114804722-114804941
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCAATGATTTTTTTAAACAGGTA
3' ss Score
8.85
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ACTCAGATTAGCCCCAAAGAAGGGTGGCAAGTGTACAGCTCAGCACAGGACCCTGATGGGCGATGCATTTGTACTGTGGTTGCTCCAGAACAAAACCTGTGTTCCAGAGATGCCAAAAGCAGGCAGCTTCGCCAGCTACTGGAAAAG
Seq A exon
GTACAGAATATGTCACAGTCTATAGAAGTCTTAAACTTGAGAACTCAGAGAGATTTTCAGTATGTCTTAAAAATGGAAACCCAAATGAAAGGGCTGAAGGCCAAGTTTCGGCAGATTGAAGATGATCGGAAGACGCTAATGACCAAGCATTTTCAA
Seq C2 exon
GAGTTGAAAGAGAAAATGGATGAGCTACTGCCCCTGATCCCAGTGTTGGAGCAGTACAAAACCGATGCAAAGCTCATCACACAGTTCAAGGAAGAAATTCGGAACCTGTCTTCAGTCCTCACTGGGATTCAGGAGGAAATTGGTGCCTATGACTATGAAGAACTTCATCAACGGGTCCTCAGCTTAGAGACCAGGCTTCGTGACTGCATGAAAAAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027965-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(46.5=95.9),PF045137=Baculo_PEP_C=PU(7.2=16.3)
A:
PF123083=Noelin-1=FE(50.5=100),PF045137=Baculo_PEP_C=FE(45.9=100)
C2:
PF123083=Noelin-1=PD(0.1=0.0),PF045137=Baculo_PEP_C=PD(44.1=66.2)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTGTTCCAGAGATGCCA
R:
AGCCTGGTCTCTAAGCTGAGG
Band lengths:
250-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: