MmuEX6073607 @ mm10
Exon Skipping
Gene
ENSMUSG00000027965 | Olfm3
Description
olfactomedin 3 [Source:MGI Symbol;Acc:MGI:2387329]
Coordinates
chr3:115090081-115102023:+
Coord C1 exon
chr3:115090081-115090227
Coord A exon
chr3:115096876-115097031
Coord C2 exon
chr3:115101804-115102023
Length
156 bp
Sequences
Splice sites
3' ss Seq
CCAATGATTTTTTTAAACAGGTA
3' ss Score
8.85
5' ss Seq
CAAGTAGGT
5' ss Score
7.33
Exon sequences
Seq C1 exon
ACTCAGATTAGCCCCAAAGAAGGGTGGCAAGTGTACAGCTCAGCACAGGACCCTGATGGGCGATGCATTTGTACTGTGGTTGCTCCAGAACAAAACCTGTGTTCCAGAGATGCCAAAAGCAGGCAGCTTCGCCAGCTACTGGAAAAG
Seq A exon
GTACAGAATATGTCACAGTCTATAGAAGTCTTAAACTTGAGAACTCAGAGAGATTTTCAGTATGTCTTAAAAATGGAAACCCAAATGAAAGGGCTGAAGGCCAAGTTTCGGCAGATTGAAGATGATCGGAAGACGCTAATGACCAAGCATTTTCAA
Seq C2 exon
GAGTTGAAAGAGAAAATGGATGAGCTACTGCCCCTGATCCCAGTGTTGGAGCAGTACAAAACCGATGCAAAGCTCATCACACAGTTCAAGGAAGAAATTCGGAACCTGTCTTCAGTCCTCACTGGGATTCAGGAGGAAATTGGTGCCTATGACTATGAAGAACTTCATCAACGGGTCCTCAGCTTAGAGACCAGGCTTCGTGACTGCATGAAAAAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000027965-'7-14,'7-13,8-14
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.075 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(46.5=95.9)
A:
PF123083=Noelin-1=FE(50.5=100)
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCTGTGTTCCAGAGATGCCA
R:
AGCCTGGTCTCTAAGCTGAGG
Band lengths:
250-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types