HsaEX6032400 @ hg38
Exon Skipping
Gene
ENSG00000118733 | OLFM3
Description
olfactomedin 3 [Source:HGNC Symbol;Acc:HGNC:17990]
Coordinates
chr1:101825026-101837025:-
Coord C1 exon
chr1:101836879-101837025
Coord A exon
chr1:101830672-101830827
Coord C2 exon
chr1:101825026-101825245
Length
156 bp
Sequences
Splice sites
3' ss Seq
ACAATATTCTTGTTCAACAGGTT
3' ss Score
9.22
5' ss Seq
CAGGTAGGT
5' ss Score
10.28
Exon sequences
Seq C1 exon
ACTCAGATTAGTCCTAAAGAAGGGTGGCAGGTGTACAGCTCAGCTCAGGATCCTGATGGGCGGTGCATTTGCACAGTTGTTGCTCCAGAACAAAACCTGTGTTCCCGGGATGCCAAAAGCAGGCAACTTCGCCAACTACTGGAAAAG
Seq A exon
GTTCAGAACATGTCCCAGTCTATTGAAGTCTTAAACTTGAGAACTCAGAGAGATTTCCAATATGTTTTAAAAATGGAAACCCAAATGAAAGGGCTGAAGGCAAAATTTCGGCAGATTGAAGATGATCGAAAGACACTTATGACCAAGCATTTTCAG
Seq C2 exon
GAGTTGAAAGAGAAAATGGACGAGCTCCTGCCTTTGATCCCCGTGCTGGAACAGTACAAAACAGATGCTAAGTTAATCACCCAGTTCAAGGAGGAAATAAGGAATCTGTCTGCTGTCCTCACTGGTATTCAGGAGGAAATTGGTGCCTATGACTACGAGGAACTACACCAAAGAGTGCTGAGCTTGGAAACAAGACTTCGTGACTGCATGAAAAAGCTAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000118733-'6-14,'6-12,8-14=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.041 A=0.019 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(46.5=95.9)
A:
PF123083=Noelin-1=PU(96.0=98.0)
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAACCTGTGTTCCCGGGATG
R:
CCAAGCTCAGCACTCTTTGGT
Band lengths:
243-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains