DreEX0052576 @ danRer10
Exon Skipping
Gene
ENSDARG00000039174 | olfm3b
Description
olfactomedin 3b [Source:ZFIN;Acc:ZDB-GENE-070912-606]
Coordinates
chr2:15679394-15680792:-
Coord C1 exon
chr2:15680648-15680792
Coord A exon
chr2:15679923-15680078
Coord C2 exon
chr2:15679394-15679613
Length
156 bp
Sequences
Splice sites
3' ss Seq
GCCCATCTTCCTCTCTTAAGATT
3' ss Score
7.94
5' ss Seq
CAGGTGGGC
5' ss Score
8.07
Exon sequences
Seq C1 exon
GACCATCAGACCAAAGGAAGGCTGGCAGGTTTACAGTTCAGCACAGGATGCCGACGGTCGCTGCATCTGTACGGTTGTGGCACCAGAACAGAGCCTGTGCTCCAGAGATGCAAAGAGCAAGCAGCTCCGCCAGTTGCTGGAGAAG
Seq A exon
ATTCAGAACATGTCGCAGTCAATCGAAGTGCTGAACCTGAGGACCCAGAGGGATTTCCAGTATGTCATGAAAATGGAGAGCCAGATGAAAGGACTCCGATCAAAGTTCAGACAAATCGAGTCCAACCGAAGAACATTATTGACTAAAAACTTTCAG
Seq C2 exon
GAGCTGAAGGGGAAGATGAATGAGTTGCAGCCGCTGATTCCGGTTTTGGAGCAGTATAAAACTGATGCCTCACTCATTTCCCAGTTCAAGGAGGAGCTCAGGAATCTCTCTGTGGTGCTGATGGCCATTCAGGAGGAGATCGGAGCGTATGATTATGAGGAGCTCCAGCAAAGGGTCCTTGGCTTGGAGGGAAGACTGAGGAACTGCATGAACAAACTTA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000039174-'2-4,'2-3,3-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(46.5=95.9),PF097894=DUF2353=PU(13.2=40.8),PF115933=Med3=PU(13.1=38.8)
A:
PF123083=Noelin-1=FE(51.5=100),PF097894=DUF2353=FE(34.2=100),PF115933=Med3=FE(35.9=100)
C2:
PF123083=Noelin-1=PD(1.0=1.4),PF097894=DUF2353=FE(48.0=100),PF115933=Med3=FE(50.3=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTCCAGAGATGCAAAGAGC
R:
TCAGTCTTCCCTCCAAGCCAA
Band lengths:
247-403
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]