DreEX0052575 @ danRer10
Exon Skipping
Gene
ENSDARG00000071493 | olfm3a
Description
olfactomedin 3a [Source:ZFIN;Acc:ZDB-GENE-080219-11]
Coordinates
chr24:28612192-28621033:-
Coord C1 exon
chr24:28620890-28621033
Coord A exon
chr24:28612637-28612792
Coord C2 exon
chr24:28612192-28612411
Length
156 bp
Sequences
Splice sites
3' ss Seq
TTGTGATCTTTGTGACATAGGTG
3' ss Score
6.91
5' ss Seq
AAGGTACGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
ACGATAGGTCCTAAGGAAGGATGGCAGGTGTACAGTTCGGCACAGGATGCAGACGGACGCTGTATCTGCACTGTGGTCGCACCGGAACAAAACCTCTGCTCCAGGGATGCCAAGAGCCGACAGCTCCGACAGCTGCTGGAGAAG
Seq A exon
GTGCAGAACATGTCTCAGTCCATTGAAGTCCTCAATCTGCGCACACAGCGTGATTTCCAGTATGTCATGAAAATGGAAAACCAAATGAAAGGCTTACGGACCAAGTTCCGGCAAATTGAAGAGGACAGGAAAACTATAATGGCCAGAAACTTCAAG
Seq C2 exon
GAGCTAAAGGATCGTATGGATGAACTCCAGCCATTGATTCCTGTGCTGGAGCAGTACAAAACAGATGCTAAGCTGATCTCTCAGTTCAAAGAGGAAATCAGGAATCTGTCTGCGGTTCTGACGGGCATCCAGGAAGAGCTGGGAGCTTATGACTACGAGACCCTCTATCAGAGAGTCCTCAGCCTAGACAGCCGTCTGCGAAACTGCATGAGCAAACTCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000071493-'1-3,'1-2,3-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(46.5=97.9),PF097304=BicD=PU(16.0=43.8),PF097894=DUF2353=PU(12.5=39.6)
A:
PF123083=Noelin-1=FE(50.5=100),PF097304=BicD=FE(38.9=100),PF097894=DUF2353=FE(33.6=100)
C2:
PF123083=Noelin-1=PD(0.1=0.0),PF097304=BicD=PD(42.7=75.7),PF097894=DUF2353=FE(48.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGGCAGGTGTACAGTTCGG
R:
CGTCAGAACCGCAGACAGATT
Band lengths:
248-404
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]