BtaEX6037776 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007550 | OLFM2
Description
Bos taurus olfactomedin 2 (OLFM2), mRNA. [Source:RefSeq mRNA;Acc:NM_001205320]
Coordinates
chr7:15552978-15556967:-
Coord C1 exon
chr7:15556773-15556967
Coord A exon
chr7:15553699-15553845
Coord C2 exon
chr7:15552978-15553197
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTAACCCTCCCGCTTCCTAGGTT
3' ss Score
8.97
5' ss Seq
CAGGTGTGT
5' ss Score
6.99
Exon sequences
Seq C1 exon
AATCCCTCTTGGGGTTCCCGCTCTCTGACCCTGACCTCCTCGCAGACCCTCTTCCAAAGCCCAGAGGAAGGCTGGCAGCTGTACACCTCAGCCCAGGCCCCCGACGGAAAATGCATCTGCACGGCTGTGATCCCTGCGCAAAGCACCTGCTCCCGAGACGGCCGGAGCCGGGAGCTGCGGCAGCTGATGGAGAAG
Seq A exon
GTTCAGAACGTCTCCCAGTCCATGGAGGTTCTTGAGTTGCGGACGTACCGGGACCTCCAGTATGTGCGCAGCATGGAGACCCTCATGCGGAGCCTGGATGCGCGGCTCCGGGCAGCCGACGGGTCCCTCTCGGCCAAGAGCTTCCAG
Seq C2 exon
GAGCTGAAGGACAGGATGACAGAGCTGTTGCCGCTGAGCTCAGTCCTGGAGCAGTACAAGGCGGACACACGGACCATCGTGCGCCTGCGAGAGGAGGTGAGGAATCTGTCCGGCAGCCTTGCCACCATCCAGGAAGAGATGGGCGCCTACGGCTACGAGGACCTGCAGCAGCGGGTGATGGCCCTGGAGGCCCGGCTCCATGCCTGCGCCCAAAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007550-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.138 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(48.0=72.3)
A:
PF123083=Noelin-1=FE(49.0=100)
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCAAAGCCCAGAGGAAGG
R:
AGATTCCTCACCTCCTCTCGC
Band lengths:
252-399
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]