MmuEX6064166 @ mm9
Exon Skipping
Gene
ENSMUSG00000032172 | Olfm2
Description
olfactomedin 2 [Source:MGI Symbol;Acc:MGI:3045350]
Coordinates
chr9:20476579-20480167:-
Coord C1 exon
chr9:20480018-20480167
Coord A exon
chr9:20477071-20477217
Coord C2 exon
chr9:20476579-20476798
Length
147 bp
Sequences
Splice sites
3' ss Seq
CTGAATGGTTTTCCTTCTAGGTC
3' ss Score
10.53
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACTCTCTTCCAGAGCCCGGAGGAGGGCTGGCAGCTTTATACGTCAGCCCAGGCACCTGATGGCAAGTGCGTCTGCACAGCCGTGATCCCTGCGCAGAGCACCTGTGCCCGAGACGGTCGGAGCAGAGAGCTTCGGCAACTCATGGAGAAG
Seq A exon
GTCCAGAATGTGTCCCAGTCCATGGAGGTCCTTGAGCTAAGGACATTCCGGGATCTCCAGTATGTTCGCAGCATGGAGACCCTCATGCGGAGCCTGGATGCAAGGCTCAGGGCAGCCGATGGGTCAGTCTCAGCCAAAAGCTTTCAG
Seq C2 exon
GAACTGAAGGACAGGATGACAGAGCTGCTGCCCCTGAGTTCAGTGCTGGAGCAGTACAAAGCAGACACACGAACCATTGTGCGCCTGCGGGAGGAGGTGAGGAACCTCTCTGGCAACCTGGCTGCCATCCAAGAGGAAATGGGTGCCTACGGGTACGAGGACTTGCAACAGCGCGTGATGGCCCTGGAAGCCCGACTCCATGCCTGCGCGCAGAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032172-'2-3,'2-2,3-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.120 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(48.0=94.0),PF148171=HAUS5=PU(15.8=50.0)
A:
PF123083=Noelin-1=FE(49.0=100),PF148171=HAUS5=FE(30.4=100)
C2:
PF123083=Noelin-1=PD(0.1=0.0),PF148171=HAUS5=FE(46.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGGCTGGCAGCTTTATA
R:
GTTGCCAGAGAGGTTCCTCAC
Band lengths:
248-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: