RnoEX6034722 @ rn6
Exon Skipping
Gene
ENSRNOG00000020519 | Olfm2
Description
olfactomedin 2 [Source:RGD Symbol;Acc:1309741]
Coordinates
chr8:21688840-21691391:-
Coord C1 exon
chr8:21691242-21691391
Coord A exon
chr8:21689328-21689474
Coord C2 exon
chr8:21688840-21689059
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTGAATGGTTCTCCTTCTAGGTC
3' ss Score
11.21
5' ss Seq
CAGGTGGGT
5' ss Score
8.56
Exon sequences
Seq C1 exon
ACTCTCTTCCAGAGCCCAGAAGAGGGCTGGCAGCTGTACACGTCAGCGCAGGCGCCGGATGGCAAATGCATCTGCACAGCTGTGATTCCTGCACAGAGCACCTGTGCCCGAGATGGTCGGAGCAGAGAGCTTCGCCAGCTCATGGAGAAG
Seq A exon
GTCCAGAATGTGTCTCAGTCCATGGAAGTCCTTGAGCTAAGGACATACCGGGATCTCCAGTATGTTCGCAGCATGGAGACCCTCATGCGGAGCCTGGATGCAAGGCTCAGGACAGCCGATGGGTCAGTCTCAGCCAAAAGCTTTCAG
Seq C2 exon
GAACTGAAGGACAGGATGACAGAGCTGCTGCCCCTGAGTTCAGTGCTGGAGCAGTACAAAGCAGACACACGGACCATTGTGCGCCTGCGGGAGGAGGTGAGGAACCTCTCAGGCAACCTGGCTGCCATCCAGGAGGAAATGGGTGCCTACGGGTACGAGGACTTGCAGCAGCGCGTGATGGCCCTGGAGGCCCGACTCCATGCCTGCGCGCAGAAGCTGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000020519-'5-8,'5-5,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.040 A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
PF123083=Noelin-1=PU(48.0=94.0)
A:
PF123083=Noelin-1=FE(49.0=100)
C2:
PF123083=Noelin-1=PD(0.1=0.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACAGCTGTGATTCCTGCACAG
R:
TGCAAGTCCTCGTACCCGTAG
Band lengths:
242-389
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]