DreEX6034604 @ danRer10
Exon Skipping
Gene
ENSDARG00000078058 | dip2a
Description
DIP2 disco-interacting protein 2 homolog A [Source:ZFIN;Acc:ZDB-GENE-091204-2]
Coordinates
chr9:606184-607620:-
Coord C1 exon
chr9:607481-607620
Coord A exon
chr9:607127-607263
Coord C2 exon
chr9:606184-606264
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTGTGTGTGTGCATGTCCAGGGC
3' ss Score
6.89
5' ss Seq
GAGGTGTGC
5' ss Score
5.35
Exon sequences
Seq C1 exon
GCCTCCAGAGACAGGTGTTCCTCCTCCAGGTAAGGCTGTTCTCTCCATGAGTGGTCTGAGCTATGGAGTGATTCGGGTGGACACCGAGGAGAAGCTCTCCGTCCTCACAGTGCAGGACGCGGGACAGGTGATGCCCGGAG
Seq A exon
GGCTGGTGTGTGTGATTCGTGTGGAGGGAACGCCGTATCTCTGCCGTACGGATGAGGTTGGAGAGATCTGTGTGAGCTCCAGCACTACAGGAATCTCCTATTATGGTCTGCCAGGAATGACCAAGAATGTCTTTGAG
Seq C2 exon
ACCATTCCCGTCACATCATCAGGAGCTCCTATCAGTGACCGAGCCTTCACACGCACCTCTCTGCTGGGCTTCATTGGTCCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000078058-'22-24,'22-23,23-24=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.146 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
PF0050123=AMP-binding=FE(9.5=100)
C2:
PF0050123=AMP-binding=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCAGAGACAGGTGTTCCT
R:
GACCAATGAAGCCCAGCAGAG
Band lengths:
218-355
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]