GgaEX6041729 @ galGal3
Exon Skipping
Gene
ENSGALG00000006228 | DIP2A
Description
NA
Coordinates
chr7:6922991-6930413:-
Coord C1 exon
chr7:6930274-6930413
Coord A exon
chr7:6923503-6923639
Coord C2 exon
chr7:6922991-6923071
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTTTCTCCTTTTCCCCTTAGCTA
3' ss Score
9.73
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
ACCTCCAGAACTGGGTGGGCCTCCTCCAGGGAAAGCAGTTTTGTCTATGAATTGTCTGAGTTACGGTGTGATAAGAGTGGATACAGAAGAGAAGTTGTCTGTTTTAACTGTACAAGATGTCGGTCAGATTATGCCTGGAG
Seq A exon
CTAATGTTTGTGTTGTGAAGGTGGATGGGACTCCTTACCTGTGTAAAGCTGATGAAGTTGGAGAAATATGTGTGAATTCAGGCGCAACTGGAATGGCTTATTTTGGCCTCCTCGGAATCACCAAAAATGTGTTTGAG
Seq C2 exon
GCCGTTCCAGTGACAGCCAGTGGTGTACCTGTTTCAGATCAGCCCTTTACAAGAACAGGACTTCTTGGCTTCGTGGGTCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006228-'28-34,'28-32,31-34=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.042 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(12.0=100)
A:
PF0050123=AMP-binding=FE(9.4=100)
C2:
PF0050123=AMP-binding=FE(5.5=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAACTGGGTGGGCCTCCTC
R:
GACCCACGAAGCCAAGAAGTC
Band lengths:
212-349
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]