RnoEX0027930 @ rn6
Exon Skipping
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13098748-13103120:+
Coord C1 exon
chr20:13098748-13098887
Coord A exon
chr20:13102100-13102236
Coord C2 exon
chr20:13103040-13103120
Length
137 bp
Sequences
Splice sites
3' ss Seq
TTGGGCTCTCTTCTCTTTAGCTA
3' ss Score
7.64
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GCCCCCAGACCTGGGAGGACCTCCACCAAGGAAAGCTGTCCTGTCCATGAACGGCCTGAGCTACGGTGTGATCAGAGTTGACACCGAGGAGAAGCTGTCGGTCCTCACTGTTCAGGATGTCGGCCAGGTGATGCCTGGAG
Seq A exon
CTAGTGTCTGTGTCGTGAAGGTAGACGGTGTCCCTTACCTCTGTAAAACTGATGAAATCGGAGAGATCTGTGTCAGTTCTGTGGCCACTGGGACAGCATATTACGGGCTGCTTGGCATCACAAAGAATGTCTTTGAG
Seq C2 exon
ACCGTCCCGGTCACTGCGGATGGAGTCCCTGTCTCTGACCGGCCTTTCACCCGGACAGGTCTTCTGGGGTTTATTGGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212-'25-28,'25-24,26-28
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
PF0050123=AMP-binding=FE(9.5=100)
C2:
PF0050123=AMP-binding=FE(5.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAGACCTGGGAGGACCTC
R:
GGCCCAATAAACCCCAGAAGA
Band lengths:
216-353
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]