BtaEX6004239 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147922321-147942820:+
Coord C1 exon
chr1:147922321-147922460
Coord A exon
chr1:147942258-147942394
Coord C2 exon
chr1:147942740-147942820
Length
137 bp
Sequences
Splice sites
3' ss Seq
GGGTTGTTTTCTCTCTTCAGCTA
3' ss Score
8.77
5' ss Seq
GAGGTCCCT
5' ss Score
-1.31
Exon sequences
Seq C1 exon
GCCGCCTGACCTGGGGGGCCCTCCTCCAAGAAGAGCTGTGCTGTCCATGAGTGGCCTCAGTCACGGGGTGATCAGAGTGGATGCTGAGGAGAAGCTGTCGGTCCTCACAGTTCAGGACGTCGGCCAGGTGATGCCTGGAG
Seq A exon
CTAACGTGTGTGTTGTGAAGGTGGAGGGCACCCCTCATCTCTGCAAAACTGATGAAGTTGGAGAGATCTGTGTGGACTCCAGTGCGACGGCGACAGCGTACTATGGGCTGCTTGGGATCACCAAAAACGTCTTTGAG
Seq C2 exon
ACTGTCCCGGTCACCGCTGGGGGCGCACCTGTCTCCGACCGACCTTTCACCAGGACAGGGCTTCTGGGCTTCATCGGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495-'17-29,'17-28,18-29=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.000 C2=0.037
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.9=100)
A:
PF0050123=AMP-binding=FE(9.4=100)
C2:
PF0050123=AMP-binding=FE(5.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCCTCCTCCAAGAAGAGCT
R:
GCCCGATGAAGCCCAGAAG
Band lengths:
202-339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]