BtaINT0049277 @ bosTau6
Intron Retention
Gene
ENSBTAG00000011495 | DIP2A
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr1:147942258-147942820:+
Coord C1 exon
chr1:147942258-147942394
Coord A exon
chr1:147942395-147942739
Coord C2 exon
chr1:147942740-147942820
Length
345 bp
Sequences
Splice sites
5' ss Seq
GAGGTCCCT
5' ss Score
-1.31
3' ss Seq
GTCCTCTGCGTTCTGTGCAGACT
3' ss Score
8.85
Exon sequences
Seq C1 exon
CTAACGTGTGTGTTGTGAAGGTGGAGGGCACCCCTCATCTCTGCAAAACTGATGAAGTTGGAGAGATCTGTGTGGACTCCAGTGCGACGGCGACAGCGTACTATGGGCTGCTTGGGATCACCAAAAACGTCTTTGAG
Seq A exon
GTCCCTGCGGGTCCCACAGCAGTGGCGGGAGGGTGGGTGAGGCGTGCAGGAGTGTGGCCTTCCTCAGGATGCCTACAGCCCTGATGGACCCTGGGTGGCCTGGGGAAGCTGGCCTCGGGTCTGCCGTCAAAGGATCCTCGGGAGAATTCAGGGCCTTCACAGGGGGGGGAGGGGAAGCCTGGGCCCNGGAGGCCATGCCTGAAGGAGCCTGATGGAGGTCACGCCAGCCAGTAGGGCCTCTGGCCTCAGGGTGGGGTGGGTTGGGGTGGGGTGGGGAGCCTCATCCCCTCCTGGGAGATGTGGTGATAGCACTTCTAGGACTGTTGTCCTCTGCGTTCTGTGCAG
Seq C2 exon
ACTGTCCCGGTCACCGCTGGGGGCGCACCTGTCTCCGACCGACCTTTCACCAGGACAGGGCTTCTGGGCTTCATCGGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000011495:ENSBTAT00000061028:19
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.037
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.4=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGTGTGTGTTGTGAAGGTGG
R:
GGCCCGATGAAGCCCAGAA
Band lengths:
214-559
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development