MmuINT0049541 @ mm9
Intron Retention
Gene
ENSMUSG00000020231 | Dip2a
Description
DIP2 disco-interacting protein 2 homolog A (Drosophila) [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:75749107-75750194:-
Coord C1 exon
chr10:75750058-75750194
Coord A exon
chr10:75749188-75750057
Coord C2 exon
chr10:75749107-75749187
Length
870 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
CCTCTCCCCTGTTCTGGCAGACC
3' ss Score
9.71
Exon sequences
Seq C1 exon
CTAGTGTGTGTGTTGTGAAGGTAGATGGTGCCCCTTATCTCTGTAAAACTGATGAAATTGGAGAAATCTGTGTCAATTCTGTTGCAACTGGGACAGCATACTATGGACTGCTTGGAATCACGAAGAATACATTTGAG
Seq A exon
GTGCGTATCCCCTTCCTGATCTTTATCTTGAAATCAAATCCCATGAGTGTTGATGGGCACAAATGTTCAGGGGGAAGTGGAGGCCCCCGAGGAGTGATTCACACACTCCACAGGCTTAGCTGGCTTCGGCCAGTGAGAAGGTACCGATAGGACCCCAGCTCTGCTCACTGTATGATCCCTGTTGTTCACGATAAGTCCCTGTAAGGACAGGTGATACCAGGAGCTGGGTGTACAAATAGGTGAGGGTTGCTGGAGTCCTGGGTAGGTGCTGTATCCACTCAGCAGAGCAGACAAGGTGAGAGAATGGTCTGTGGAGGGCCAGGTGCCCTGGGAGTCTCTTCCTGTGGGACACTAAACCCTGGGCCACAGGCGGTGTGTGGTATTTGAAATGGCTAAAGTAATGCCATCTTTCCCTAACTCGATTTTGTGTCCGCTAAGACAGGTCTCAGCCTTCCAGCCCTCATCAATCACATCCACCCTGGTTATGCTTTTTGAGCTGTCTGTGACCAGGAGTGTGGTCCAAATATGTTAATGAAAGTAATAAATCTTTGTGCAATCTAAAACTGAAAATTGAAACAACTAAGAGGAAATGTAAATAAAATGCTGCACATTTGAAAAACAATGCTGCTAAGCTTTGCAAGAGGACAACATTACCGAATGTTCTAGCTCCCTGATGGATGTCTTCCCCCTCGAGCATTGACGTAACAGTGGGCTTTGTCTTTAAGAAGCCTGCGTCATCACCAAGAGGCAATTTGGAGGCCTGAGCCTGCCTTGGCCTGGCCACTATTGAGTCCTCCTGCTTGCCCGCCCTGTCTTTCTAGTAGTCAGTGAGTTGTCTGCTGCCTGACATCCTCTCCCCTGTTCTGGCAG
Seq C2 exon
ACCGTCCCGGTCACTGCGGACGGAGTCCCTGTCTCTGACCGGCCTTTCACCAGGACAGGCCTTCTGGGATTTATCGGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231-Dip2a:NM_001081419:19
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.034
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(53.6=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(8.3=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGTGTGTTGTGAAGGTAGA
R:
GTCCGATAAATCCCAGAAGGCC
Band lengths:
214-1084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: