MmuINT0049541 @ mm10
Intron Retention
Gene
ENSMUSG00000020231 | Dip2a
Description
disco interacting protein 2 homolog A [Source:MGI Symbol;Acc:MGI:2385920]
Coordinates
chr10:76286362-76287449:-
Coord C1 exon
chr10:76287313-76287449
Coord A exon
chr10:76286443-76287312
Coord C2 exon
chr10:76286362-76286442
Length
870 bp
Sequences
Splice sites
5' ss Seq
GAGGTGCGT
5' ss Score
8.42
3' ss Seq
CCTCTCCCCTGTTCTGGCAGACC
3' ss Score
9.71
Exon sequences
Seq C1 exon
CTAGTGTGTGTGTTGTGAAGGTAGATGGTGCCCCTTATCTCTGTAAAACTGATGAAATTGGAGAAATCTGTGTCAATTCTGTTGCAACTGGGACAGCATACTATGGACTGCTTGGAATCACGAAGAATACATTTGAG
Seq A exon
GTGCGTATCCCCTTCCTGATCTTTATCTTGAAATCAAATCCCATGAGTGTTGATGGGCACAAATGTTCAGGGGGAAGTGGAGGCCCCCGAGGAGTGATTCACACACTCCACAGGCTTAGCTGGCTTCGGCCAGTGAGAAGGTACCGATAGGACCCCAGCTCTGCTCACTGTATGATCCCTGTTGTTCACGATAAGTCCCTGTAAGGACAGGTGATACCAGGAGCTGGGTGTACAAATAGGTGAGGGTTGCTGGAGTCCTGGGTAGGTGCTGTATCCACTCAGCAGAGCAGACAAGGTGAGAGAATGGTCTGTGGAGGGCCAGGTGCCCTGGGAGTCTCTTCCTGTGGGACACTAAACCCTGGGCCACAGGCGGTGTGTGGTATTTGAAATGGCTAAAGTAATGCCATCTTTCCCTAACTCGATTTTGTGTCCGCTAAGACAGGTCTCAGCCTTCCAGCCCTCATCAATCACATCCACCCTGGTTATGCTTTTTGAGCTGTCTGTGACCAGGAGTGTGGTCCAAATATGTTAATGAAAGTAATAAATCTTTGTGCAATCTAAAACTGAAAATTGAAACAACTAAGAGGAAATGTAAATAAAATGCTGCACATTTGAAAAACAATGCTGCTAAGCTTTGCAAGAGGACAACATTACCGAATGTTCTAGCTCCCTGATGGATGTCTTCCCCCTCGAGCATTGACGTAACAGTGGGCTTTGTCTTTAAGAAGCCTGCGTCATCACCAAGAGGCAATTTGGAGGCCTGAGCCTGCCTTGGCCTGGCCACTATTGAGTCCTCCTGCTTGCCCGCCCTGTCTTTCTAGTAGTCAGTGAGTTGTCTGCTGCCTGACATCCTCTCCCCTGTTCTGGCAG
Seq C2 exon
ACCGTCCCGGTCACTGCGGACGGAGTCCCTGTCTCTGACCGGCCTTTCACCAGGACAGGCCTTCTGGGATTTATCGGACCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000020231:ENSMUST00000160048:18
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.042
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(53.6=100)
A:
NA
C2:
PF0050123=AMP-binding=PD(8.3=25.0)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTGTGTGTTGTGAAGGTAGA
R:
GTCCGATAAATCCCAGAAGGCC
Band lengths:
214-1084
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types