RnoINT0047707 @ rn6
Intron Retention
Gene
ENSRNOG00000043212 | Dip2a
Description
disco-interacting protein 2 homolog A [Source:RGD Symbol;Acc:1582897]
Coordinates
chr20:13102100-13103120:+
Coord C1 exon
chr20:13102100-13102236
Coord A exon
chr20:13102237-13103039
Coord C2 exon
chr20:13103040-13103120
Length
803 bp
Sequences
Splice sites
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
3' ss Seq
CCTCTTCCCTGTTCTGGCAGACC
3' ss Score
9.7
Exon sequences
Seq C1 exon
CTAGTGTCTGTGTCGTGAAGGTAGACGGTGTCCCTTACCTCTGTAAAACTGATGAAATCGGAGAGATCTGTGTCAGTTCTGTGGCCACTGGGACAGCATATTACGGGCTGCTTGGCATCACAAAGAATGTCTTTGAG
Seq A exon
GTTTGTATCCTTTTCCTCATCTTTCTCTGGTCCCAGGAGTGTTGCTGGGCCCCAGTACAGGGTGGAGTGGAGGCCTGCGAGGGGCTGCTGGGACCGAGCGATTCACAGGCTCCACAGACTTCCACGGCTTTGGCCAGTAAGGAGGCTCTGATAGACCTCAGCTCGGCTCACAGCACGGCCCTGTTCATGACGAGTCCTGTACGCACAGGCCATACCAGGAGCTTGGGTGGAGTCCTGTGGGTGGTGAATCCATTCAGAAGTGCAGTCAGGGTGAGAAAATGGTTTGTGGAAGGCCTGGTGCCCTGTGGAACACTTAGCCCTGGGCCATAGGCGCTTTGTGGCATTTGAAATGACTAAGGTAGTGTCATCTGGTCCTAACTCTATTTTCTGTCCTCTAAGATAGTTCTCAGCCTTCCACCCCTCCCTCCCCAACAGTCACATCCACCCAGGCTATGCCAGACTGTGGTCCAAATATGTTAACTGAAATGATCTGCAAGCTAAAATAGAACACTGGACCAACTAGGAGGGAATAGAAATAAAATGTAACTGTTGTGTATGTCTGAAAACTGCTGCTAAGCTTTGCAAGAAGATGACATTCCCAGAAGGCTCTACCTCTGACCCACGTTTCCCCTAGAGCACTGATGTAATGGTGGGCTTTGTCTTTAAAGCGCCTGCGCTCCCAAGCGTCATCACCAGAGACGTTCTGGAGGCATGAGCCATTATTGAGTGCTGCCTGCCTGCCTTGTCTTTCTAGTAGTCAGTGAGTTGTCTGCTGCCTGACATCCTCTTCCCTGTTCTGGCAG
Seq C2 exon
ACCGTCCCGGTCACTGCGGATGGAGTCCCTGTCTCTGACCGGCCTTTCACCCGGACAGGTCTTCTGGGGTTTATTGGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000043212:ENSRNOT00000066017:22
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(9.5=100)
A:
NA
C2:
PF0050123=AMP-binding=FE(5.5=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGTCTGTGTCGTGAAGGTAGA
R:
GGCCCAATAAACCCCAGAAGA
Band lengths:
215-1018
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]