HsaEX6006742 @ hg38
Exon Skipping
Gene
ENSG00000160305 | DIP2A
Description
disco interacting protein 2 homolog A [Source:HGNC Symbol;Acc:HGNC:17217]
Coordinates
chr21:46541756-46545961:+
Coord C1 exon
chr21:46541756-46541895
Coord A exon
chr21:46545137-46545273
Coord C2 exon
chr21:46545881-46545961
Length
137 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTTTTCTCATTTTAGCTA
3' ss Score
8.23
5' ss Seq
GAGGTTTGT
5' ss Score
6.36
Exon sequences
Seq C1 exon
GCCACCTGATCTGGGAGGACCACCTCCAAGAAAAGCAGTCCTGTCGATGAACGGTCTAAGTTATGGTGTTATCAGAGTGGATACTGAAGAAAAGTTGTCAGTCCTTACTGTTCAGGACGTTGGTCAGGTGATGCCTGGAG
Seq A exon
CTAATGTATGTGTTGTGAAGTTAGAAGGTACCCCTTATCTTTGTAAAACTGATGAAGTGGGAGAAATATGCGTCAGTTCCAGTGCAACTGGCACAGCGTACTATGGATTGCTTGGAATCACGAAGAATGTGTTTGAG
Seq C2 exon
GCAGTTCCGGTCACCACAGGAGGAGCACCCATCTTTGACAGGCCATTCACCAGGACAGGCCTGCTGGGCTTCATCGGGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000160305_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.104 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=FE(10.2=100)
A:
PF0050123=AMP-binding=FE(9.4=100)
C2:
PF0050123=AMP-binding=FE(5.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CACCTGATCTGGGAGGACCAC
R:
AGGCCCGATGAAGCCCAG
Band lengths:
219-356
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains