DreEX6034716 @ danRer10
Exon Skipping
Gene
ENSDARG00000042821 | agps
Description
alkylglycerone phosphate synthase [Source:ZFIN;Acc:ZDB-GENE-031118-14]
Coordinates
chr9:1607934-1611952:-
Coord C1 exon
chr9:1611827-1611952
Coord A exon
chr9:1610974-1611082
Coord C2 exon
chr9:1607934-1608061
Length
109 bp
Sequences
Splice sites
3' ss Seq
GTGTGTGTGTGTGTGTGCAGGTG
3' ss Score
10.65
5' ss Seq
AGGGTAAAC
5' ss Score
4.45
Exon sequences
Seq C1 exon
CTGAATGAGCGAGGCTACTGTACGGGTCATGAGCCAGACTCTATGGAGTTCAGTTCTCTGGGCGGCTGGGTGGCCACACGGGCATCAGGCATGAAGAAGAACATCTACGGCAACATAGAGGACCTG
Seq A exon
GTGGTGCATATAAAGATGGTGACCCCTAGAGGAGTGATTGAGAAGAGCTGTCTTGGGCCCCGCATGTCCACCGGCCCTGACATACACCACTTCATCATGGGCTCTGAGG
Seq C2 exon
GAACTCTGGGAGTGGTGACTGAGGTCACGATGAAGATCCGACCCATTCCTGAGTACCAGAAGTACGGCTCGGTGGTGTTCCCCAACTTCCAGCAGGGTGTGGCGTGTCTGAGAGAGGTGGCCCGACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000042821-'11-12,'11-10,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(28.7=100)
A:
PF0156518=FAD_binding_4=PD(10.5=40.5)
C2:
PF0291314=FAD-oxidase_C=PU(11.2=62.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATGAGCGAGGCTACTGTACGG
R:
GGGCCACCTCTCTCAGACAC
Band lengths:
245-354
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]