RnoEX6017472 @ rn6
Exon Skipping
Gene
ENSRNOG00000001547 | Agps
Description
alkylglycerone phosphate synthase [Source:RGD Symbol;Acc:620364]
Coordinates
chr3:62686532-62696889:+
Coord C1 exon
chr3:62686532-62686657
Coord A exon
chr3:62688255-62688363
Coord C2 exon
chr3:62696762-62696889
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTGTGCATTGTATTGAACAGGTG
3' ss Score
7.83
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CTTAAAGAAAGTGGTTATTGTACAGGTCATGAACCGGACTCCCTAGAATTCAGCACTGTGGGAGGATGGATATCTACTCGAGCATCAGGCATGAAGAAGAATGTCTACGGCAATATTGAGGACCTG
Seq A exon
GTGGTTCACATGAAAATGGTAACACCTAGAGGTGTAATAGAGAAAAGCTCCCAAGGCCCTCGGATGTCAACGGGGCCTGATATCCATCACTTCATCATGGGCTCTGAAG
Seq C2 exon
GAACTCTTGGTGTAATAACAGAAGCTACAATAAAAATCAGACCAACTCCTGAATACCAAAAGTATGGTTCAGTGGCTTTCCCTAATTTTGAACAAGGTGTAGCCTGTTTAAGAGAAATTGCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000001547-'20-17,'20-15,21-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.387 C2=0.000
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(28.5=100)
A:
PF0156518=FAD_binding_4=PD(11.1=43.2)
C2:
PF0291314=FAD-oxidase_C=PU(14.5=62.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTTATTGTACAGGTCATGA
R:
GCTTTGCAATTTCTCTTAAACAGGC
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]