MmuEX6102237 @ mm10
Exon Skipping
Gene
ENSMUSG00000042410 | Agps
Description
alkylglycerone phosphate synthase [Source:MGI Symbol;Acc:MGI:2443065]
Coordinates
chr2:75866747-75877598:+
Coord C1 exon
chr2:75866747-75866872
Coord A exon
chr2:75868305-75868413
Coord C2 exon
chr2:75877471-75877598
Length
109 bp
Sequences
Splice sites
3' ss Seq
TTGCGCATTGTATTAAACAGGTG
3' ss Score
7.54
5' ss Seq
AAGGTTGGT
5' ss Score
8.46
Exon sequences
Seq C1 exon
CTTAAAGAAAGTGGTTATTGTACAGGTCATGAACCGGACTCCCTGGAATTCAGCACCGTGGGAGGATGGATATCTACTCGAGCGTCAGGCATGAAGAAAAATATCTATGGCAATATTGAGGACCTG
Seq A exon
GTGGTTCATATGAAAATGGTAACACCTAGAGGTGTAATAGAGAAAAGCTCCCAAGGACCTCGTATGTCAACGGGCCCTGATATCCATCACTTCATTATGGGATCTGAAG
Seq C2 exon
GAACTCTTGGTGTAATAACAGAAGCTACAATAAAGATCAGACCAACCCCTGAGTACCAGAAGTACGGTTCGGTGGCTTTCCCTAACTTTGAACAAGGTGTAGCCTGTTTAAGAGAAATTGCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000042410-'18-16,'18-13,19-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.048 A=0.392 C2=0.000
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(28.5=100)
A:
PF0156518=FAD_binding_4=PD(11.1=43.2)
C2:
PF0291314=FAD-oxidase_C=PU(24.1=62.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGTTATTGTACAGGTCATGA
R:
GCTTTGCAATTTCTCTTAAACAGGC
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types