GgaEX1007012 @ galGal3
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
NA
Coordinates
chr7:16841723-16844360:-
Coord C1 exon
chr7:16844235-16844360
Coord A exon
chr7:16842279-16842387
Coord C2 exon
chr7:16841723-16841850
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTATTGTTTAAACAGGTG
3' ss Score
8.7
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CTTTCTGAAAGTGGCTTCTGTACAGGCCATGAACCGGACTCCATGGAGTTCAGCTCACTAGGAGGATGGGTAGCAACACGAGCATCGGGCATGAAGAAAAACATCTATGGAAACATTGAAGATCTG
Seq A exon
GTGATTCATATAAAAATGGTAACTCCGAGAGGAATAGTTGAAAAAAACTGTCAAGTACCTCGCATGTCAACAGGACCTGATATCCATCACTTTATTATGGGATCTGAAG
Seq C2 exon
GAATTCTGGGAGTGGTTACTGAAGTTACGATAAAGATTCGTCCGCTTCCTGAATACCAGAAATACGGCTCCGTGGTCTTCCCCAACTTTGAACGAGGGGTGGCCTGCCTAAGGGAAGTGGCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236-'12-17,'12-15,13-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(28.9=100)
A:
PF0156518=FAD_binding_4=PD(9.9=37.8)
C2:
PF0291314=FAD-oxidase_C=PU(9.9=62.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTTCTGTACAGGCCATG
R:
TGCTTTGCCACTTCCCTTAGG
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]