GgaEX1007012 @ galGal4
Exon Skipping
Gene
ENSGALG00000009236 | AGPS
Description
alkylglycerone phosphate synthase [Source:HGNC Symbol;Acc:HGNC:327]
Coordinates
chr7:15240598-15243235:-
Coord C1 exon
chr7:15243110-15243235
Coord A exon
chr7:15241154-15241262
Coord C2 exon
chr7:15240598-15240725
Length
109 bp
Sequences
Splice sites
3' ss Seq
ATTGTTTATTGTTTAAACAGGTG
3' ss Score
8.7
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
CTTTCTGAAAGTGGCTTCTGTACAGGCCATGAACCGGACTCCATGGAGTTCAGCTCACTAGGAGGATGGGTAGCAACACGAGCATCGGGCATGAAGAAAAACATCTATGGAAACATTGAAGATCTG
Seq A exon
GTGATTCATATAAAAATGGTAACTCCGAGAGGAATAGTTGAAAAAAACTGTCAAGTACCTCGCATGTCAACAGGACCTGATATCCATCACTTTATTATGGGATCTGAAG
Seq C2 exon
GAATTCTGGGAGTGGTTACTGAAGTTACGATAAAGATTCGTCCGCTTCCTGAATACCAGAAATACGGCTCCGTGGTCTTCCCCAACTTTGAACGAGGGGTGGCCTGCCTAAGGGAAGTGGCAAAGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000009236-'20-22,'20-20,21-22
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.014 C2=0.000
Domain overlap (PFAM):
C1:
PF0156518=FAD_binding_4=FE(28.9=100)
A:
PF0156518=FAD_binding_4=PD(9.9=37.8)
C2:
PF0291314=FAD-oxidase_C=PU(24.8=62.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGGCTTCTGTACAGGCCATG
R:
TGCTTTGCCACTTCCCTTAGG
Band lengths:
243-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]