DreEX6034747 @ danRer10
Exon Skipping
Gene
ENSDARG00000090804 | gpr155a
Description
G protein-coupled receptor 155a [Source:ZFIN;Acc:ZDB-GENE-100922-89]
Coordinates
chr9:2479309-2486760:+
Coord C1 exon
chr9:2479309-2479708
Coord A exon
chr9:2482753-2482921
Coord C2 exon
chr9:2486605-2486760
Length
169 bp
Sequences
Splice sites
3' ss Seq
TCTCTCCGTGGTCTCTTTAGGCT
3' ss Score
10.01
5' ss Seq
GTGGTATGT
5' ss Score
7.64
Exon sequences
Seq C1 exon
TGGAGGCGTTATACCGCAGCACACACCCCGAGTACCTGCAGTACATCTACCTGGTGGCTCCAGTCTCCCTCATGGTCTTAAACCCACTGGGCTTCATGTTCTGTGAGGTTCAGCGGAGGAAAAACGGAGAACCCAGCCAGCAGAGCAAACTGCACGTGCTGGGTCTGGTGGTCCTGCAGGTGTTCAAGAACCCCATCGTCTTCATGGTGATGATCGGGCTCGTGTCCCACTTCCTGCTGTGCCAAAAAATCCCCGCCTTCATGGAGCAGTTTGTAGATGGTCTGGCCAACTCGTTTGGAGGTGCAGCGCTGTTTTATTTGGGGCTGTCCATGGTGGGCCAGCTGAAAAAACTGACCCGCACTACTGTTGTGGCACTGATTCTTCTTATTACAGCCAAACT
Seq A exon
GCTGATGATGCCTCTGATCTGCAGAGGGATGGTGGAAGTTTTGGACAATACAAACAGAAGTACGCTGAACCACACCAGTCTGTCAAACTACGCCTTTCTGTACGGAGTCTTTCCCACCGCACCCAGTGTGGCCATTTATGCAGCTCATTACAACATGGAGCTGGAGGTG
Seq C2 exon
GTGACCTCAGGTATGGTGGTCAGCACGTTTCTGTCCGCCCCCATCATGTACGTGTCTGCGTGGTTGTTGACCATCCCGTGGATGGATTCAGCTCCGCTGGCCTCTGCTCTGCAGAACGTCAGCTTCGACATCAGCATTATCAGCCTCTTCGCACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000090804-'4-4,'4-3,5-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(31.1=38.1),PF0354713=Mem_trans=PU(54.7=69.4)
A:
PF0354713=Mem_trans=FE(32.9=100)
C2:
PF0354713=Mem_trans=PD(11.2=36.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAGGTGTTCAAGAACCCCAT
R:
AAACGTGCTGACCACCATACC
Band lengths:
255-424
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]