HsaEX0028338 @ hg38
Exon Skipping
Gene
ENSG00000163328 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr2:174468912-174473364:-
Coord C1 exon
chr2:174472965-174473364
Coord A exon
chr2:174470390-174470555
Coord C2 exon
chr2:174468912-174469067
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGTTTTTCTTTTTTCTTCAGTCT
3' ss Score
9.32
5' ss Seq
ATTGTATGT
5' ss Score
4.34
Exon sequences
Seq C1 exon
TTGAAGCTTTATATCAAACTACATACCCAGAATATCTCCAGTACATTTATTTGGTGGCACCAATATCTCTTATGATGTTAAACCCTATAGGGTTTATTTTCTGTGAAATCCAAAAGTGGAAAGACACTCAAAATGCTTCTCAAAATAAAATAAAAATTGTGGGACTCGGACTCCTGCGTGTATTACAGAACCCAATAGTATTTATGGTCTTCATTGGCATCGCCTTCAATTTTATTCTTGATCGAAAGGTACCTGTATATGTCGAAAATTTTCTTGATGGACTTGGAAATTCTTTTTCTGGATCAGCCCTATTTTATCTTGGTCTCACGATGGTGGGAAAAATAAAGAGACTGAAGAAGTCGGCATTTGTAGTACTAATTCTTCTCATCACAGCTAAACT
Seq A exon
TCTGGTGCTGCCACTTCTGTGCAGAGAAATGGTGGAACTCTTGGACAAGGGCGACAGTGTGGTGAACCATACAAGTTTATCAAATTATGCATTTCTGTATGGTGTATTTCCTGTAGCACCAGGAGTGGCTATCTTTGCAACACAATTCAACATGGAAGTAGAAATT
Seq C2 exon
ATAACCTCAGGGATGGTGATAAGCACATTTGTGTCTGCTCCCATCATGTACGTTTCTGCCTGGTTACTGACCTTTCCCACTATGGACCCTAAGCCATTGGCATATGCCATCCAGAATGTTAGTTTTGATATAAGTATTGTCAGCCTGATCTCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000163328_MULTIEX1-7/19=5-8
Average complexity
ME(6-7[100=98])
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(31.5=38.8),PF0354713=Mem_trans=PU(55.8=71.6)
A:
PF0354713=Mem_trans=FE(32.0=100)
C2:
PF0354713=Mem_trans=PD(11.0=36.5)
Main Skipping Isoform:
ENST00000295500fB16587
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TATGGTCTTCATTGGCATCGCC
R:
CGTACATGATGGGAGCAGACAC
Band lengths:
250-416
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development