RnoEX6017430 @ rn6
Exon Skipping
Gene
ENSRNOG00000018485 | Gpr155
Description
G protein-coupled receptor 155 [Source:RGD Symbol;Acc:1309162]
Coordinates
chr3:60088282-60092248:-
Coord C1 exon
chr3:60091849-60092248
Coord A exon
chr3:60089271-60089436
Coord C2 exon
chr3:60088282-60088437
Length
166 bp
Sequences
Splice sites
3' ss Seq
TGCATCTCTTATGTCTCCAGCCT
3' ss Score
6.91
5' ss Seq
ATCGTACGT
5' ss Score
8.34
Exon sequences
Seq C1 exon
TTGAAGCTCTGTACCAAACCACATACCCAGAATATCTCCAGTACATTTATTTGGTGGCACCAATATCTCTTATGATGTTAAACCCTATAGGGTTCATCTTCTGTGAAATCCAGAAGTCAAAAGACACTCGAAATGCTTCTCAAAACAAAGCAAAAATTGTGGGACTTGGATTCCTGCGCGTGTTACAGAACCCGATAGTGTTTATGGTCTTCGTTGGCATCGCCTTCAATTTTATTCTTGATAAAAAGATCCCTGTGTATATGGAAAATTTTCTTGATGGGCTTGCAAACTCCTTCTCTGGGTCAGCCCTGTTCTATCTCGGTCTGACCATGGTAGGAAAAATCAGGCGGCTGAAGAAGTCGGCGTTCGTGGCGCTCATTGTCCTCATCACAGCTAAACT
Seq A exon
CCTGGTGCTGCCCCTTCTGTGCAGAGAAATGGTGGAAGTCCTGGACAAGGGTAACAGCGTAGTGAACCACACGAGTCTGTCCAACTATGCGTTTCTCTATGGCGTCTTCCCTGTGGCTCCAGGAGTGGCTATCTTTGCAACACAATTCAACATGGAAGTGGAGATC
Seq C2 exon
ATAACCTCAGGAATGGTCATAAGTACATTTGTGTCTGCTCCAATCATGTATGTTTCTGCCTGGTTATTGACCTTTCCTACCATGGATGCTAAGCCACTGGCATATGCCATTCAGAATGTTAGCTTTGACATAAGCATTATCAGCCTGGTCTCCTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018485-'11-8,'11-6,12-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(32.7=41.0),PF0354713=Mem_trans=PU(56.1=72.4)
A:
PF0354713=Mem_trans=FE(31.8=100)
C2:
PF0354713=Mem_trans=PD(11.0=36.5)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal3)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGCCCTGTTCTATCTCGGT
R:
AGGAGACCAGGCTGATAATGCT
Band lengths:
252-418
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]