GgaEX7005961 @ galGal4
Exon Skipping
Gene
ENSGALG00000014209 | GPR155
Description
G protein-coupled receptor 155 [Source:HGNC Symbol;Acc:HGNC:22951]
Coordinates
chr7:16384585-16387196:+
Coord C1 exon
chr7:16384585-16384984
Coord A exon
chr7:16385738-16385903
Coord C2 exon
chr7:16387041-16387196
Length
166 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCCTTCTCTTTTCAGACT
3' ss Score
12.81
5' ss Seq
ATTGTATGT
5' ss Score
4.34
Exon sequences
Seq C1 exon
TTGAAGCTCTATACCAAACCACTTACCCAGAGTATCTCCAGTACATTTACCTAGTGGCTCCAATATCTCTTATGATGCTAAACCCTCTGGGGTTTATCTTCTGTGAAATCCAGAAGTGGAGAGACAATCGCACTGTGTCCCACAGCAAAATCAAAATAGTGGGCCTAGCACTCCTTCGAGTTCTGCAGAACCCAATTGTATTCATGGTCTTCATAGGAATTGCCTCAAACTTCATTCTTGGCCAGAAAATTCCCGATTACCTTGAAAATTTCCTCGATGGACTGGGCAGTTCATTTTCTGGCTCTGCACTTTTTTACCTTGGACTAACTATGGTGGGACAAACAAAAAAACTGACTAAGGGTATGTTTGTTGCACTGATCCTCCTCATCACAGCTAAACT
Seq A exon
ACTTATGATGCCATTTCTCTGTAGAGAAATGGTGGAACTCCTGGACAAGAGCAGCAGCGCAGTCAACCACACCAGTTTATCGAACTATGCATTTCTTTATGGAGTTTTTCCAGCAGCACCTGGCGTTGCAATATTTGCAACTCAATTTAATATGGAAGTAGGAATT
Seq C2 exon
ATTACCTCAGGCATGGTGATAAGCACTTTTGTGTCTGCACCTATCATGTATGTTTCTGCATGGCTTTTGACCATTCCATCTATGGACCCCAACCCACTGGCATCTGCTCTCCAGAATGTTAGCTTTGACATAAGTATTGTCAGCCTTGTTTCTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000014209-'3-5,'3-4,5-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0354713=Mem_trans=PD(27.1=31.3),PF0354713=Mem_trans=PU(56.3=73.1)
A:
PF0354713=Mem_trans=FE(31.6=100)
C2:
PF0354713=Mem_trans=PD(10.9=36.5)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
ATTTCCTCGATGGACTGGGCA
R:
TTCTGGAGAGCAGATGCCAGT
Band lengths:
249-415
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]