DreEX6034960 @ danRer10
Exon Skipping
Gene
ENSDARG00000012586 | fmnl2a
Description
formin-like 2a [Source:ZFIN;Acc:ZDB-GENE-081105-70]
Coordinates
chr9:4784048-4786560:-
Coord C1 exon
chr9:4786326-4786560
Coord A exon
chr9:4784210-4784278
Coord C2 exon
chr9:4784048-4784128
Length
69 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTCTTATCTCAATAGCAA
3' ss Score
8.9
5' ss Seq
GAAGTAAGA
5' ss Score
6.42
Exon sequences
Seq C1 exon
ATTTGACTTGAGGACATTGCCGGTGGATTTCGTGGAGTGTTTGATGAGATTCATTCCATCGGAAGCGGAGCTGAAAGTTTTGCGGCAGTACGAAAAGGAGCGCAAGCCTCTGGAAAACCTGACAGACGAGGATCGCTTCATGATCCAGTTCAGCAAGATAGAGCGCCTCATGCAGAAGATGACCATTATGGCATTTGTGGGGAACTTTACAGAGAGCATTCAGATGCTCACGCCG
Seq A exon
CAACTTCATGCCGTCATTGCAGCCTCTGTCTCTATCAAGTCCTCACAAAAACTCAAGAAGATTCTGGAA
Seq C2 exon
ATCATCTTAGCTCTGGGGAACTACATGAACAGCAGTAAAAGAGGAGCAGTGTATGGTTTCAAGCTGCAGAGCTTAGATCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000012586-'22-23,'22-22,23-23=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0218118=FH2=FE(21.3=100)
A:
PF0218118=FH2=FE(6.0=100)
C2:
PF0218118=FH2=FE(7.1=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCAAGCCTCTGGAAAACCTGA
R:
TGCTGTTCATGTAGTTCCCCA
Band lengths:
168-237
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]